Segmentation fault error in int2lm
Dear all,
recently, I want to set up simulation with COSMO - CLM in CORDEX -EU domain. The driven data is ERAI nterim. I use chain to submit jobs. Then, the std out is correct with no error. But the std err always gets error as following. I don’t how to fix this problem. Is there special parameter should to switch on? I attach all the files.
—-
forrtl: severe (174):
SIGSEGV
, segmentation fault occurred
Image PC Routine Line Source
int2lm.exe 0000000000F918F5 Unknown Unknown Unknown
int2lm.exe 0000000000F8F6B7 Unknown Unknown Unknown
int2lm.exe 0000000000F43D14 Unknown Unknown Unknown
…..
MPT
: #11 0×0000000000d1b0e4 in src_read_coarse_grid::scatter_data (procarrays=…,
MPT: index=12, iloc=28, irank=3, ilev=58, leof=.FALSE., lrequired=4294967295,
MPT: istat=0)
MPT: at /work/bhuang/cclm-sp_2.4/src/int2lm/src/src_read_coarse_grid.f90:4195
MPT: #12 0×0000000000cc5771 in src_read_coarse_grid::org_read_coarse_grid (nnow=0,
MPT: lfirst=4294967295, ydate=…, .tmp.YDATE.len_V$f9f=14)
MPT: at /work/bhuang/cclm-sp_2.4/src/int2lm/src/src_read_coarse_grid.f90:1773
MPT: #13 0×000000000075dab4 in int2lm_org ()
MPT: at /work/bhuang/cclm-sp_2.4/src/int2lm/src/int2lm_org.f90:265
MPT: #14 0×000000000040cc1e in main ()
MPT: #15 0×00002aaab09a8c36 in __libc_start_main () from /lib64/libc.so.6
MPT: #16 0×000000000040cb29 in _start () at ../sysdeps/x86_64/elf/start.S:113
MPT: (gdb) A debugging session is active.
——
Greetings,
Bo
Dear Burkhardt,
actually, I used the cclm-sp_2.4 version from CLM Training 2017. Firstly, I tested the ext data (europe_0440.nc) and gcm data (ncep). It works. The simulation finished and the post-process also has done. It does not work when I change the gcm data ncep to erainterim. I only change the GRID _IN in int2lm.job.tmpl. Attached the joblog file for both simulations. How to fix this problem? Thank you very much.
ncep:
&GRID_IN
pcontrol_fi =30000.,
ie_in_tot = 192, je_in_tot = 94, ke_in_tot = 28,
startlat_in_tot = -88.542, startlon_in_tot = -180.,
endlat_in_tot = 88.542, endlon_in_tot = 178.125,
pollat_in = 90.0, pollon_in = 180.0,
lushift_in=.FALSE.,.FALSE., lvshift_in=.FALSE.,.FALSE.,
ke_soil_in=1,
czml_soil_in=0.05, 1.05,
/END
erainterim
&GRID_IN
pcontrol_fi =30000.,
ie_in_tot = 512, je_in_tot = 256, ke_in_tot = 60,
startlat_in_tot = -89.46282, startlon_in_tot = -180.0,
endlat_in_tot = 89.46282, endlon_in_tot = 179.2969,
pollat_in = 90.0, pollon_in = 180.0,
lushift_in=.FALSE.,.FALSE., lvshift_in=.FALSE.,.FALSE.,
ke_soil_in=3,
czml_soil_in=0.035, 0.175, 0.64, 1.775,
/END
Greetings,
Bo
Dear Burkhardt,
actually, I used the cclm-sp_2.4 version from CLM Training 2017. Firstly, I tested the ext data (europe_0440.nc) and gcm data (ncep). It works. The simulation finished and the post-process also has done. It does not work when I change the gcm data ncep to erainterim. I only change the GRID _IN in int2lm.job.tmpl. Attached the joblog file for both simulations. How to fix this problem? Thank you very much.
ncep:
&GRID_IN pcontrol_fi =30000., ie_in_tot = 192, je_in_tot = 94, ke_in_tot = 28, startlat_in_tot = -88.542, startlon_in_tot = -180., endlat_in_tot = 88.542, endlon_in_tot = 178.125, pollat_in = 90.0, pollon_in = 180.0, lushift_in=.FALSE.,.FALSE., lvshift_in=.FALSE.,.FALSE., ke_soil_in=1, czml_soil_in=0.05, 1.05, /ENDerainterim
&GRID_IN pcontrol_fi =30000., ie_in_tot = 512, je_in_tot = 256, ke_in_tot = 60, startlat_in_tot = -89.46282, startlon_in_tot = -180.0, endlat_in_tot = 89.46282, endlon_in_tot = 179.2969, pollat_in = 90.0, pollon_in = 180.0, lushift_in=.FALSE.,.FALSE., lvshift_in=.FALSE.,.FALSE., ke_soil_in=3, czml_soil_in=0.035, 0.175, 0.64, 1.775, /ENDGreetings,
Bo
Dear Burkhardt,
actually, I used the cclm-sp_2.4 version from CLM Training 2017. Firstly, I tested the ext data (europe_0440.nc) and gcm data (ncep). It works. The simulation finished and the post-process also has done. It does not work when I change the gcm data ncep to erainterim. I only change the GRID _IN in int2lm.job.tmpl. Attached the joblog file for both simulations. How to fix this problem? Thank you very much.
ncep:
&GRID_IN
pcontrol_fi =30000.,
ie_in_tot = 192, je_in_tot = 94, ke_in_tot = 28,
startlat_in_tot = -88.542, startlon_in_tot = -180.,
endlat_in_tot = 88.542, endlon_in_tot = 178.125,
pollat_in = 90.0, pollon_in = 180.0,
lushift_in=.FALSE.,.FALSE., lvshift_in=.FALSE.,.FALSE.,
ke_soil_in=1,
czml_soil_in=0.05, 1.05,
/END
erainterim
&GRID_IN
pcontrol_fi =30000.,
ie_in_tot = 512, je_in_tot = 256, ke_in_tot = 60,
startlat_in_tot = -89.46282, startlon_in_tot = -180.0,
endlat_in_tot = 89.46282, endlon_in_tot = 179.2969,
pollat_in = 90.0, pollon_in = 180.0,
lushift_in=.FALSE.,.FALSE., lvshift_in=.FALSE.,.FALSE.,
ke_soil_in=3,
czml_soil_in=0.035, 0.175, 0.64, 1.775,
/END
Greetings,
Bo
Hi,
can you try
lprog_qi=.TRUE.
in the &CONTRL section for the europe_0440.nc case with
ERAI
nterim data?
I’ve just tried it and it seems to work for me.
Probably related to this
[[http://redc.clm-community.eu/boards/12/topics/417]]
NCEP does not have QI, while ERAI nterim has. Somehow our setup in the environment/compiler/library/settings at vilje (our HPC ) seems to have problems with ignoring forcing data that’s available.
Hi,
can you try
lprog_qi=.TRUE.
in the &CONTRL section for the europe_0440.nc case with ERAI nterim data?I’ve just tried it and it seems to work for me.
Probably related to this
[[http://redc.clm-community.eu/boards/12/topics/417]]NCEP does not have QI, while ERAI nterim has. Somehow our setup in the environment/compiler/library/settings at vilje (our HPC ) seems to have problems with ignoring forcing data that’s available.
Hi,
can you try
lprog_qi=.TRUE.
in the &CONTRL section for the europe_0440.nc case with
ERAI
nterim data?
I’ve just tried it and it seems to work for me.
Probably related to this
[[http://redc.clm-community.eu/boards/12/topics/417]]
NCEP does not have QI, while ERAI nterim has. Somehow our setup in the environment/compiler/library/settings at vilje (our HPC ) seems to have problems with ignoring forcing data that’s available.
Hi Burkhardt,
enclosed the prep and int2lm job for both erainterim and ncep. Please find them.
Greetings,
Bo
Hi Burkhardt,
enclosed the prep and int2lm job for both erainterim and ncep. Please find them.
Greetings,
Bo
Hi Burkhardt,
enclosed the prep and int2lm job for both erainterim and ncep. Please find them.
Greetings,
Bo
1. Andreas is right, you have to use
lprog_qi=.TRUE.
for
ERAI
nterim, otherwise the simulation will fail.
2. Please follow the instruction in
cclm-sp_2.4/chain/extensions/boundary_data/erainterim/README
You have not made the correct settings in prep and int2lm templates as provided in the
cclm-sp_2.4/chain/extensions/boundary_data/erainterim/templates
directory.
1. Andreas is right, you have to use
lprog_qi=.TRUE.for ERAI nterim, otherwise the simulation will fail.2. Please follow the instruction in
cclm-sp_2.4/chain/extensions/boundary_data/erainterim/README
You have not made the correct settings in prep and int2lm templates as provided in thecclm-sp_2.4/chain/extensions/boundary_data/erainterim/templatesdirectory.
1. Andreas is right, you have to use
lprog_qi=.TRUE.
for
ERAI
nterim, otherwise the simulation will fail.
2. Please follow the instruction in
cclm-sp_2.4/chain/extensions/boundary_data/erainterim/README
You have not made the correct settings in prep and int2lm templates as provided in the
cclm-sp_2.4/chain/extensions/boundary_data/erainterim/templates
directory.
Hi Andreas,
it works now. That is the reason for the error. Thank you so much.
Greetings,
Bo
Hi Andreas,
it works now. That is the reason for the error. Thank you so much.
Greetings,
Bo
Hi Andreas,
it works now. That is the reason for the error. Thank you so much.
Greetings,
Bo
By the way, we had this problem already in the int2lm forum:
http://redc.clm-community.eu/boards/12/topics/444
By the way, we had this problem already in the int2lm forum:
http://redc.clm-community.eu/boards/12/topics/444
By the way, we had this problem already in the int2lm forum:
http://redc.clm-community.eu/boards/12/topics/444
Hi Burkhardt,
thank you very much for your suggestions and tips. I will follow the instruction to set the model.
Greetings,
Bo
Hi Burkhardt,
thank you very much for your suggestions and tips. I will follow the instruction to set the model.
Greetings,
Bo
Hi Burkhardt,
thank you very much for your suggestions and tips. I will follow the instruction to set the model.
Greetings,
Bo
Dear all,
recently, I want to set up simulation with COSMO - CLM in CORDEX -EU domain. The driven data is ERAI nterim. I use chain to submit jobs. Then, the std out is correct with no error. But the std err always gets error as following. I don’t how to fix this problem. Is there special parameter should to switch on? I attach all the files.
—-
forrtl: severe (174): SIGSEGV , segmentation fault occurred
Image PC Routine Line Source
int2lm.exe 0000000000F918F5 Unknown Unknown Unknown
int2lm.exe 0000000000F8F6B7 Unknown Unknown Unknown
int2lm.exe 0000000000F43D14 Unknown Unknown Unknown
…..
MPT : #11 0×0000000000d1b0e4 in src_read_coarse_grid::scatter_data (procarrays=…,
MPT: index=12, iloc=28, irank=3, ilev=58, leof=.FALSE., lrequired=4294967295,
MPT: istat=0)
MPT: at /work/bhuang/cclm-sp_2.4/src/int2lm/src/src_read_coarse_grid.f90:4195
MPT: #12 0×0000000000cc5771 in src_read_coarse_grid::org_read_coarse_grid (nnow=0,
MPT: lfirst=4294967295, ydate=…, .tmp.YDATE.len_V$f9f=14)
MPT: at /work/bhuang/cclm-sp_2.4/src/int2lm/src/src_read_coarse_grid.f90:1773
MPT: #13 0×000000000075dab4 in int2lm_org ()
MPT: at /work/bhuang/cclm-sp_2.4/src/int2lm/src/int2lm_org.f90:265
MPT: #14 0×000000000040cc1e in main ()
MPT: #15 0×00002aaab09a8c36 in __libc_start_main () from /lib64/libc.so.6
MPT: #16 0×000000000040cb29 in _start () at ../sysdeps/x86_64/elf/start.S:113
MPT: (gdb) A debugging session is active.
——
Greetings,
Bo