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To 1.
Hans-Juergen Panitz found this mistake that the soil depth was wrong. So that is why it was corrected. I cannot tell if the resulting temperature and moisture will be the same, but you can quickly check that yourself. If you type ncdump -V soil1 on a caf file you will see the values of the layers.
To 2.
ke_soil_in are the levels, and czml_soil_in is the depth of the layers.
Cheers,
Merja